STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betACholine dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (568 aa)    
Predicted Functional Partners:
betB
Betaine aldehyde dehydrogenase BADH; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
 
 0.965
AAO54070.1
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.912
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.889
betI
Regulatory protein BetI; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity).
 
  
 0.852
psd
Rhodanese domain protein/phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.805
AAO53695.1
Lead uptake protein, putative; See PMID:20190049 for expression data; similar to GP:12718499, and GP:12718499; identified by sequence similarity; putative.
   
 
 0.682
AAO56195.1
Conserved domain protein; See PMID:20190049 for expression data; similar to GP:9948859; identified by sequence similarity; putative.
    
 0.602
AAO56421.1
DnaJ domain protein; Identified by match to PFAM protein family HMM PF00226.
    
 0.602
AAO57232.1
TPR domain protein; Identified by match to PFAM protein family HMM PF00515.
    
 0.602
AAO57746.1
DnaJ domain protein; Identified by match to PFAM protein family HMM PF00226.
    
 0.602
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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