STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO55817.1Serine/threonine protein kinase, putative. (529 aa)    
Predicted Functional Partners:
AAO55818.1
Nitrate transporter.
 
    0.881
AAO55816.1
Assimilatory nitrate reductase electron transfer subunit domain protein; Similar to GP:15159393, and SP:P42435; identified by sequence similarity; putative.
 
    0.776
AAO56054.1
Sigma-54 dependent transcriptional regulator; Identified by match to TIGR protein family HMM TIGR01817.
  
 
 0.772
rsgA
Conserved protein of unknown function; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
  
 0.746
AAO55003.1
Sensory box histidine kinase/response regulator; Similar to GB:L07555, GB:Z30426, GB:Z30430, GB:Z30427, GB:Z30429, GB:Z30428, SP:Q07108, PID:291898, PID:397939, and PID:558352; identified by sequence similarity; putative.
  
 
 0.734
AAO58297.1
Sensor histidine kinase/response regulator RetS; See PMID:20190049 for expression data.
 
 
 0.721
hrpQ
Type III secretion protein HrpQ; See PMID:20190049 for expression data; similar to GP:11276510; identified by sequence similarity; putative.
   
 
 0.719
AAO56958.1
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.719
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.702
AAO54101.1
Sensory box histidine kinase.
 
  
 0.699
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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