STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsC-2Ribose ABC transporter, permease protein; Similar to GP:6714794, and SP:P36948; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family. (334 aa)    
Predicted Functional Partners:
rbsA-2
Ribose ABC transporter, ATP-binding protein.
 0.993
rbsB-2
Ribose ABC transporter, periplasmic ribose-binding protein; Similar to GP:6714794, and SP:P36949; identified by sequence similarity; putative.
 0.993
rbsA-1
Ribose ABC transporter, ATP-binding protein.
 0.972
AAO56487.1
Ribose ABC transporter, ATP-binding protein, putative; Similar to GP:6714793, and SP:P36947; identified by sequence similarity; putative.
 0.972
AAO55980.1
Periplasmic substrate-binding protein; See PMID:20190049 for expression data; similar to SP:P49308, GB:Y00711, GB:X13794, GB:X13795, GB:X13796, GB:X13797, GB:X13798, GB:X13799, GB:X13800, SP:P07195, PID:1200083, PID:34329, GB:Y00711, GB:X13794, GB:X13795, GB:X13796, GB:X13797, GB:X13798, GB:X13799, GB:X13800, SP:P07195, PID:1200083, and PID:34329; identified by sequence similarity; putative.
 
 0.970
rbsB-1
Ribose ABC transporter, periplasmic ribose-binding protein; See PMID:20190049 for expression data.
 0.969
AAO56488.1
Ribose ABC transporter, periplasmic ribose-binding protein, putative; Similar to SP:P02925; identified by sequence similarity; putative.
 
 0.968
AAO56538.1
Sugar ABC transporter, periplasmic sugar-binding, putative; Similar to GP:15141307, and SP:P49308; identified by sequence similarity; putative.
 
 0.877
rbsD
Ribose ABC transporter protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.875
AAO56964.1
Sugar ABC transporter, ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family.
 
 0.872
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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