STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56345.1ThiJ/PfpI family protein; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01383. (276 aa)    
Predicted Functional Partners:
AAO56344.1
TonB-dependent siderophore receptor, putative; Similar to GB:U13737, GB:U13738, GB:U26943, SP:P42574, PID:561666, PID:561668, and PID:857569; identified by sequence similarity; putative.
       0.757
AAO57876.1
Transcriptional regulator, AraC family; Similar to GP:15139927; identified by sequence similarity; putative.
  
     0.497
AAO56342.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
       0.492
AAO56343.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:9949964; identified by sequence similarity; putative.
       0.492
AAO57332.1
Conserved hypothetical protein; Similar to GP:6716340, and GP:6716340; identified by sequence similarity; putative.
  
     0.432
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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