STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hflDConserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:9948694, and GP:9948694; identified by sequence similarity; putative. (206 aa)    
Predicted Functional Partners:
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
  
 0.925
AAO57387.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
    0.738
rnt
Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
  
    0.722
purB
Adenylosuccinate lyase; See PMID:20190049 for expression data; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.641
nudJ
mutT/nudix family protein; Belongs to the Nudix hydrolase family. NudJ subfamily.
       0.633
AAO56839.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
 
  
 0.609
AAO53769.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:1929096, GB:X65867, GB:S60710, SP:P30566, PID:28904, and PID:28905; identified by sequence similarity; putative.
  
     0.566
AAO57304.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
    0.554
truD
Conserved protein of unknown function; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
  
    0.531
AAO58359.1
Membrane protein, putative; See PMID:20190049 for expression data.
  
     0.519
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.