STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpStryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (449 aa)    
Predicted Functional Partners:
AAO53730.1
LysM domain protein; Similar to GB:L21196, and PID:347174; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GB:L21196, and PID:347174, identified by sequence similarity, putative.
  
   0.825
AAO58826.1
LysM domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01476.
  
   0.825
AAO56879.1
Baseplate assembly protein W; Similar to GP:6723254; identified by sequence similarity; putative.
   
   0.822
AAO57879.1
Conserved hypothetical protein; Similar to GP:9950674, and GP:9950674; identified by sequence similarity; putative.
  
    0.822
AAO56868.1
Tail protein D; Similar to GP:5725169; identified by sequence similarity; putative.
   
   0.768
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
 
  
 0.733
pheT
phenylalanyl-tRNA synthetase, beta subunit; See PMID:20190049 for expression data; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.730
dnaZX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
   
 0.726
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
     
 0.723
trpC
Indole-3-glycerol phosphate synthase; See PMID:20190049 for expression data; Belongs to the TrpC family.
  
  
 0.719
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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