STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selOConserved hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). (487 aa)    
Predicted Functional Partners:
sucA
2-oxoglutarate dehydrogenase, E1 component; Identified by match to PFAM protein family HMM PF02779; see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02779.
      
 0.775
trxA
Thioredoxin; Similar to SP:P56430, GB:X78992, SP:P47974, PID:509778, and PID:984509; identified by sequence similarity; putative.
     
 0.707
hisG
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.
     
 0.689
trxB
Thioredoxin reductase; Identified by match to TIGR protein family HMM TIGR01812; see PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01812.
      
 0.592
AAO58455.1
Transcriptional regulator, GntR family; See PMID:20190049 for expression data; similar to GP:6468725; identified by sequence similarity; putative.
       0.493
AAO56542.1
Conserved domain protein; Similar to GB:X57522, GB:U07197, GB:U07198, GB:X57521, GB:L21204, GB:L21205, GB:L21206, GB:L21207, GB:L21208, GB:S70256, GB:S70266, GB:S70274, GB:S70260, SP:Q03518, PID:1054745, PID:34636, PID:36061, PID:463921, and PID:930122; identified by sequence similarity; putative.
      
 0.459
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.