STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdcB2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family. (291 aa)    
Predicted Functional Partners:
mdcG
Malonate decarboxylase subunit, putative; Transfers 2'-(5-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-[acyl-carrier-protein] of the malonate decarboxylase to yield holo-[acyl-carrier-protein]; Belongs to the MdcG family.
 
 
 0.991
mdcC
Malonate decarboxylase, delta subunit; Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism.
 
  
 0.990
mdcE
Malonate decarboxylase, gamma subunit; Similar to GP:4062977, and GP:2240015; identified by sequence similarity; putative.
 
  
 0.976
mdcA
Malonate decarboxylase, alpha subunit; Identified by match to TIGR protein family HMM TIGR01110.
  
 0.969
mdcD
Malonate decarboxylase, beta subunit; Similar to GP:2240014; identified by sequence similarity; putative.
 
  
 0.965
AAO58508.1
Malonyl CoA-acyl carrier protein transacylase, putative; Identified by match to PFAM protein family HMM PF00698.
 
    0.948
madL
Malonate transporter, MadL subunit; Identified by match to TIGR protein family HMM TIGR00807.
 
    0.916
madM
Malonate transporter, MadM subunit; Similar to GP:4062981; identified by sequence similarity; putative.
 
     0.847
AAO54472.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:15978391, and GP:15978391; identified by sequence similarity; putative.
  
  
 0.719
AAO58505.1
Malonate utilization transcriptional regulator; Similar to SP:P52684, GB:X66899, GB:X72990, GB:X72991, GB:X72992, GB:X72993, GB:X72994, GB:X72995, GB:X72996, GB:X72997, GB:X72998, GB:X72999, GB:X73000, GB:X73001, GB:X73002, GB:X73003, GB:X73004, SP:Q01844, PID:1572086, PID:1666068, PID:31280, and PID:825654; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.701
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.