STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aguAConserved protein of unknown function; Mediates the hydrolysis of agmatine into N- carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine. (368 aa)    
Predicted Functional Partners:
AAO58816.1
Carbon-nitrogen hydrolase family protein; See PMID:20190049 for expression data; similar to GP:14289301; identified by sequence similarity; putative.
 
 0.998
speA
Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
  
 0.959
AAO58018.1
Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein; See PMID:20190049 for expression data; similar to GP:15075900; identified by sequence similarity; putative; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
 0.889
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
 0.708
AAO54060.1
Hydrolase, carbon-nitrogen family.
  
 0.633
AAO58817.1
Aminotransferase, class III; Similar to GP:15140985; identified by sequence similarity; putative.
     
 0.619
AAO58814.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
       0.458
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
     
 0.455
saxB-2
Isothiocyanate resistance protein SaxB; See PMID:21385714; see PMID:20190049 for expression data.
   
    0.451
AAO55547.1
Oxidoreductase, zinc-binding protein.
   
  
 0.443
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
Server load: low (28%) [HD]