STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opgDPeriplasmic glucan biosynthesis protein, putative; Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs); Belongs to the OpgD/OpgG family. (539 aa)    
Predicted Functional Partners:
plcA1
Acid phosphatase; Similar to GP:7650483, and GP:8572766; identified by sequence similarity; putative.
      
 0.846
AAO58947.1
N-acetylmuramoyl-L-alanine amidase, family 3; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01520.
      
 0.846
AAO55672.1
Aminotransferase, class V; See PMID:20190049 for expression data; similar to GP:13506638; identified by sequence similarity; putative.
      
 0.842
AAO56772.1
TonB-dependent siderophore receptor, putative; See PMID:20190049 for expression data; similar to GP:2981048, and SP:P00089; identified by sequence similarity; putative.
      
 0.842
AAO56949.1
Potassium efflux system protein PhaE, putative; Similar to GP:3128271; identified by sequence similarity; putative.
      
 0.842
mdoH
Periplasmic glucan biosynthesis protein; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).
 
  
 0.833
AAO56977.1
Membrane protein, putative.
 
     0.525
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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