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VPA0877 protein (Vibrio parahaemolyticus) - STRING interaction network
"VPA0877" - LamB/YcsF family protein in Vibrio parahaemolyticus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPA0877LamB/YcsF family protein (251 aa)    
Predicted Functional Partners:
VPA0876
Hypothetical protein (227 aa)
   
  0.998
VPA0875
Carboxylase (311 aa)
 
   
  0.991
VPA1168
Hypothetical protein (412 aa)
 
   
  0.888
VP2681
Manganese transporter (421 aa)
   
   
  0.634
VPA1128
acyl-CoA carboxylase alpha chain (704 aa)
   
        0.609
VP2881
acetyl-CoA carboxylase biotin carboxylase subunit (447 aa)
   
        0.580
VPA1658
Hypothetical protein (403 aa)
   
        0.576
VP1647
Methylcitrate synthase (380 aa)
     
        0.568
VP0842
Type II citrate synthase (429 aa)
     
        0.568
VP2874
Sensor histidine kinase (1143 aa)
   
        0.552
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 223926
Other names: Beneckea parahaemolytica, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus, V. parahaemolyticus RIMD 2210633, Vibrio parahaemolyticus, Vibrio parahaemolyticus RIMD 2210633, Vibrio parahaemolyticus str. RIMD 2210633
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