STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycxDUncharacterized HTH-type transcriptional regulator YcxD; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator (444 aa)    
Predicted Functional Partners:
ycxC
Uncharacterized transporter YcxC; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter
 
  
 0.979
ydeL
Gntr family transcriptional regulator / mocr family aminotransferase; Uncharacterized HTH-type transcriptional regulator YdeL; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator
  
   
0.536
ydeF
Uncharacterized HTH-type transcriptional regulator YdeF; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator
  
   
0.532
gabR
Gntr family transcriptional regulator / mocr family aminotransferase; Activates the transcription of the gabTD operon. Is also a repressor of its own expression, both in the presence and absence of GABA. Binds specifically to the DNA region overlapping the -35 region of the gabT promoter and the -10 and +1 regions of the gabR promoter. Principally regulates the utilization of gamma-aminobutyrate
  
   
0.531
ydfD
Gntr family transcriptional regulator, regulator for abca and norabc; Uncharacterized HTH-type transcriptional regulator YdfD; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator
  
   
0.524
yisV
Uncharacterized HTH-type transcriptional regulator YisV; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator
  
   
0.516
yhdI
Gntr family transcriptional regulator / mocr family aminotransferase; Uncharacterized HTH-type transcriptional regulator YhdI; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator
  
   
0.510
ycxB
Hypothetical protein; Uncharacterized protein YcxB; Evidence 5: No homology to any previously reported sequences
       0.476
yfmM
Abc transporter atp-binding protein; Belongs to the ABC transporter superfamily
 
    0.465
gabT
4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
 
  
 0.451
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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