Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aq_050 | cyc | aq_050 | aq_042 | Putative protein. | Cytochrome c. | 0.605 |
aq_050 | petA | aq_050 | aq_045 | Putative protein. | Rieske-I iron sulfur protein. | 0.567 |
aq_050 | petB | aq_050 | aq_044 | Putative protein. | Cytochrome b. | 0.521 |
aq_050 | phhB | aq_050 | aq_049 | Putative protein. | Pterin-4a-carbinolamine dehydratase. | 0.773 |
aq_050 | pyrD | aq_050 | aq_046 | Putative protein. | Dihydroorotase dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. | 0.778 |
cyc | aq_050 | aq_042 | aq_050 | Cytochrome c. | Putative protein. | 0.605 |
cyc | petA | aq_042 | aq_045 | Cytochrome c. | Rieske-I iron sulfur protein. | 0.999 |
cyc | petB | aq_042 | aq_044 | Cytochrome c. | Cytochrome b. | 0.999 |
cyc | phhB | aq_042 | aq_049 | Cytochrome c. | Pterin-4a-carbinolamine dehydratase. | 0.521 |
cyc | pyrD | aq_042 | aq_046 | Cytochrome c. | Dihydroorotase dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. | 0.550 |
petA | aq_050 | aq_045 | aq_050 | Rieske-I iron sulfur protein. | Putative protein. | 0.567 |
petA | cyc | aq_045 | aq_042 | Rieske-I iron sulfur protein. | Cytochrome c. | 0.999 |
petA | petB | aq_045 | aq_044 | Rieske-I iron sulfur protein. | Cytochrome b. | 0.999 |
petA | phhB | aq_045 | aq_049 | Rieske-I iron sulfur protein. | Pterin-4a-carbinolamine dehydratase. | 0.548 |
petA | pyrD | aq_045 | aq_046 | Rieske-I iron sulfur protein. | Dihydroorotase dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. | 0.541 |
petB | aq_050 | aq_044 | aq_050 | Cytochrome b. | Putative protein. | 0.521 |
petB | cyc | aq_044 | aq_042 | Cytochrome b. | Cytochrome c. | 0.999 |
petB | petA | aq_044 | aq_045 | Cytochrome b. | Rieske-I iron sulfur protein. | 0.999 |
petB | phhB | aq_044 | aq_049 | Cytochrome b. | Pterin-4a-carbinolamine dehydratase. | 0.521 |
petB | pyrD | aq_044 | aq_046 | Cytochrome b. | Dihydroorotase dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. | 0.616 |
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