Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cspC | deaD | aq_1303a | aq_613 | Cold shock protein. | ATP-dependent RNA helicase DeaD. | 0.841 |
cspC | rplC | aq_1303a | aq_009 | Cold shock protein. | Ribosomal protein L03; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.817 |
cspC | rplP | aq_1303a | aq_018 | Cold shock protein. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.810 |
cspC | rplS | aq_1303a | aq_1954 | Cold shock protein. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.837 |
cspC | rplT | aq_1303a | aq_952 | Cold shock protein. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity). | 0.837 |
cspC | rpmA | aq_1303a | aq_1773a | Cold shock protein. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.836 |
cspC | rpoB | aq_1303a | aq_1939 | Cold shock protein. | RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.792 |
cspC | rpoZ | aq_1303a | aq_183a | Cold shock protein. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity). | 0.793 |
cspC | rpsP | aq_1303a | aq_123 | Cold shock protein. | Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.907 |
cspC | rpsQ | aq_1303a | aq_020 | Cold shock protein. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.778 |
deaD | cspC | aq_613 | aq_1303a | ATP-dependent RNA helicase DeaD. | Cold shock protein. | 0.841 |
deaD | rplC | aq_613 | aq_009 | ATP-dependent RNA helicase DeaD. | Ribosomal protein L03; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.973 |
deaD | rplP | aq_613 | aq_018 | ATP-dependent RNA helicase DeaD. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.483 |
deaD | rplT | aq_613 | aq_952 | ATP-dependent RNA helicase DeaD. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity). | 0.487 |
deaD | rpoB | aq_613 | aq_1939 | ATP-dependent RNA helicase DeaD. | RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.832 |
deaD | rpoZ | aq_613 | aq_183a | ATP-dependent RNA helicase DeaD. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity). | 0.749 |
deaD | rpsQ | aq_613 | aq_020 | ATP-dependent RNA helicase DeaD. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.641 |
rplC | cspC | aq_009 | aq_1303a | Ribosomal protein L03; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Cold shock protein. | 0.817 |
rplC | deaD | aq_009 | aq_613 | Ribosomal protein L03; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | ATP-dependent RNA helicase DeaD. | 0.973 |
rplC | rplP | aq_009 | aq_018 | Ribosomal protein L03; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
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