Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aco | frdA | aq_1784 | aq_594 | Aconitase. | Fumarate reductase flavoprotein subunit. | 0.704 |
aco | frdB1 | aq_1784 | aq_553 | Aconitase. | Fumarate reductase iron-sulfur subunit. | 0.744 |
aco | gltA | aq_1784 | aq_150 | Aconitase. | Citrate synthase. | 0.983 |
aco | icd | aq_1784 | aq_1512 | Aconitase. | Isocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 0.994 |
aco | nuoD1 | aq_1784 | aq_551 | Aconitase. | NADH dehydrogenase I chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.736 |
aco | nuoD2 | aq_1784 | aq_1314 | Aconitase. | NADH dehydrogenase I chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.736 |
aco | sodA | aq_1784 | aq_1499 | Aconitase. | Superoxide dismutase (Fe/Mn family); Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. | 0.952 |
aco | sucC1 | aq_1784 | aq_1306 | Aconitase. | succinyl-CoA ligase beta subunit. | 0.926 |
aco | sucD1 | aq_1784 | aq_1888 | Aconitase. | succinyl-CoA ligase alpha subunit. | 0.939 |
frdA | aco | aq_594 | aq_1784 | Fumarate reductase flavoprotein subunit. | Aconitase. | 0.704 |
frdA | frdB1 | aq_594 | aq_553 | Fumarate reductase flavoprotein subunit. | Fumarate reductase iron-sulfur subunit. | 0.999 |
frdA | gltA | aq_594 | aq_150 | Fumarate reductase flavoprotein subunit. | Citrate synthase. | 0.923 |
frdA | icd | aq_594 | aq_1512 | Fumarate reductase flavoprotein subunit. | Isocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 0.685 |
frdA | nuoD1 | aq_594 | aq_551 | Fumarate reductase flavoprotein subunit. | NADH dehydrogenase I chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.993 |
frdA | nuoD2 | aq_594 | aq_1314 | Fumarate reductase flavoprotein subunit. | NADH dehydrogenase I chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.993 |
frdA | sucC1 | aq_594 | aq_1306 | Fumarate reductase flavoprotein subunit. | succinyl-CoA ligase beta subunit. | 0.884 |
frdA | sucC2 | aq_594 | aq_1620 | Fumarate reductase flavoprotein subunit. | succinyl-CoA ligase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.985 |
frdA | sucD1 | aq_594 | aq_1888 | Fumarate reductase flavoprotein subunit. | succinyl-CoA ligase alpha subunit. | 0.813 |
frdB1 | aco | aq_553 | aq_1784 | Fumarate reductase iron-sulfur subunit. | Aconitase. | 0.744 |
frdB1 | frdA | aq_553 | aq_594 | Fumarate reductase iron-sulfur subunit. | Fumarate reductase flavoprotein subunit. | 0.999 |
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