Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aq_2098 | carA | aq_2098 | aq_410 | Putative protein. | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | 0.885 |
aq_2098 | carB1 | aq_2098 | aq_1172 | Putative protein. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.778 |
aq_2098 | carB2 | aq_2098 | aq_2101 | Putative protein. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.899 |
aq_2098 | pyrB | aq_2098 | aq_409 | Putative protein. | Aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.886 |
aq_2098 | pyrC | aq_2098 | aq_806 | Putative protein. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.804 |
aq_2098 | pyrD | aq_2098 | aq_046 | Putative protein. | Dihydroorotase dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. | 0.996 |
aq_2098 | pyrF | aq_2098 | aq_1580 | Putative protein. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.871 |
aq_2098 | umpS | aq_2098 | aq_1907 | Putative protein. | Uridine 5-monophosphate synthase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.886 |
carA | aq_2098 | aq_410 | aq_2098 | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | Putative protein. | 0.885 |
carA | carB1 | aq_410 | aq_1172 | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.999 |
carA | carB2 | aq_410 | aq_2101 | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.999 |
carA | pyrB | aq_410 | aq_409 | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | Aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
carA | pyrC | aq_410 | aq_806 | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.994 |
carA | pyrD | aq_410 | aq_046 | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | Dihydroorotase dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. | 0.949 |
carA | pyrDB | aq_410 | aq_1305 | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | Dihydroorotate dehydrogenase electron transfer subunit; Belongs to the PyrK family. | 0.885 |
carA | pyrF | aq_410 | aq_1580 | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.947 |
carA | umpS | aq_410 | aq_1907 | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | Uridine 5-monophosphate synthase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.946 |
carB1 | aq_2098 | aq_1172 | aq_2098 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | Putative protein. | 0.778 |
carB1 | carA | aq_1172 | aq_410 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | Carbamoyl phosphate synthetase small subunit; Belongs to the CarA family. | 0.999 |
carB1 | carB2 | aq_1172 | aq_2101 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.919 |
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