Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
acrR3 | aq_1442 | aq_281 | aq_1442 | Transcriptional regulator (TetR/AcrR family). | Hypothetical protein. | 0.420 |
acrR3 | aq_2185 | aq_281 | aq_2185 | Transcriptional regulator (TetR/AcrR family). | Hypothetical protein. | 0.473 |
acrR3 | aq_276 | aq_281 | aq_276 | Transcriptional regulator (TetR/AcrR family). | Putative protein. | 0.706 |
acrR3 | aq_277 | aq_281 | aq_277 | Transcriptional regulator (TetR/AcrR family). | Putative protein. | 0.706 |
acrR3 | aq_278 | aq_281 | aq_278 | Transcriptional regulator (TetR/AcrR family). | Hypothetical protein. | 0.706 |
acrR3 | mutY1 | aq_281 | aq_282 | Transcriptional regulator (TetR/AcrR family). | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.544 |
acrR3 | pth | aq_281 | aq_346 | Transcriptional regulator (TetR/AcrR family). | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.444 |
aq_1442 | acrR3 | aq_1442 | aq_281 | Hypothetical protein. | Transcriptional regulator (TetR/AcrR family). | 0.420 |
aq_1442 | aq_2185 | aq_1442 | aq_2185 | Hypothetical protein. | Hypothetical protein. | 0.420 |
aq_2185 | acrR3 | aq_2185 | aq_281 | Hypothetical protein. | Transcriptional regulator (TetR/AcrR family). | 0.473 |
aq_2185 | aq_1442 | aq_2185 | aq_1442 | Hypothetical protein. | Hypothetical protein. | 0.420 |
aq_2185 | pth | aq_2185 | aq_346 | Hypothetical protein. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.444 |
aq_276 | acrR3 | aq_276 | aq_281 | Putative protein. | Transcriptional regulator (TetR/AcrR family). | 0.706 |
aq_276 | aq_277 | aq_276 | aq_277 | Putative protein. | Putative protein. | 0.995 |
aq_276 | aq_278 | aq_276 | aq_278 | Putative protein. | Hypothetical protein. | 0.995 |
aq_276 | mutY1 | aq_276 | aq_282 | Putative protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.493 |
aq_277 | acrR3 | aq_277 | aq_281 | Putative protein. | Transcriptional regulator (TetR/AcrR family). | 0.706 |
aq_277 | aq_276 | aq_277 | aq_276 | Putative protein. | Putative protein. | 0.995 |
aq_277 | aq_278 | aq_277 | aq_278 | Putative protein. | Hypothetical protein. | 0.995 |
aq_277 | mutY1 | aq_277 | aq_282 | Putative protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.493 |
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