STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprCOuter membrane protein c. (680 aa)    
Predicted Functional Partners:
aq_531
Putative protein.
 
 
 0.983
hylA
Hemolysin.
    
 
 0.956
aq_1982
Putative protein.
  
 
 0.955
aq_1259
Putative protein.
 
   
 0.562
aq_699
Hypothetical protein.
  
  
 0.524
aq_1263
Putative protein.
  
     0.473
aq_1752
Putative protein.
  
     0.461
exbD
Biopolymer transport ExbD; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
  
  
 0.458
aq_1987
Hypothetical protein.
  
  
 0.458
exbB
Biopolymer transport exbB; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity).
 
  
 0.457
Your Current Organism:
Aquifex aeolicus
NCBI taxonomy Id: 224324
Other names: A. aeolicus VF5, Aquifex aeolicus VF5, Aquifex aeolicus str. VF5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.