Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aq_116 | dmsB2 | aq_116 | aq_067 | Putative protein. | Dimethylsulfoxide reductase chain B. | 0.969 |
| aq_116 | frdA | aq_116 | aq_594 | Putative protein. | Fumarate reductase flavoprotein subunit. | 0.910 |
| aq_116 | frdB1 | aq_116 | aq_553 | Putative protein. | Fumarate reductase iron-sulfur subunit. | 0.903 |
| aq_116 | frdB2 | aq_116 | aq_655 | Putative protein. | Fumarate reductase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.903 |
| aq_116 | fumB | aq_116 | aq_1780 | Putative protein. | Fumarate hydratase (fumarase). | 0.900 |
| aq_116 | fumX | aq_116 | aq_1679 | Putative protein. | C-terminal fumarate hydratase, class I. | 0.900 |
| aq_116 | nox | aq_116 | aq_835 | Putative protein. | NADH oxidase. | 0.929 |
| aq_116 | sucC2 | aq_116 | aq_1620 | Putative protein. | succinyl-CoA ligase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.900 |
| aq_116 | sucD2 | aq_116 | aq_1622 | Putative protein. | succinyl-CoA ligase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.900 |
| dmsB2 | aq_116 | aq_067 | aq_116 | Dimethylsulfoxide reductase chain B. | Putative protein. | 0.969 |
| dmsB2 | frdA | aq_067 | aq_594 | Dimethylsulfoxide reductase chain B. | Fumarate reductase flavoprotein subunit. | 0.927 |
| dmsB2 | frdB1 | aq_067 | aq_553 | Dimethylsulfoxide reductase chain B. | Fumarate reductase iron-sulfur subunit. | 0.903 |
| dmsB2 | frdB2 | aq_067 | aq_655 | Dimethylsulfoxide reductase chain B. | Fumarate reductase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.903 |
| dmsB2 | fumB | aq_067 | aq_1780 | Dimethylsulfoxide reductase chain B. | Fumarate hydratase (fumarase). | 0.900 |
| dmsB2 | fumX | aq_067 | aq_1679 | Dimethylsulfoxide reductase chain B. | C-terminal fumarate hydratase, class I. | 0.900 |
| dmsB2 | narB | aq_067 | aq_217 | Dimethylsulfoxide reductase chain B. | Nitrate reductase narB; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.716 |
| dmsB2 | nox | aq_067 | aq_835 | Dimethylsulfoxide reductase chain B. | NADH oxidase. | 0.910 |
| dmsB2 | sucC2 | aq_067 | aq_1620 | Dimethylsulfoxide reductase chain B. | succinyl-CoA ligase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.900 |
| dmsB2 | sucD2 | aq_067 | aq_1622 | Dimethylsulfoxide reductase chain B. | succinyl-CoA ligase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.900 |
| frdA | aq_116 | aq_594 | aq_116 | Fumarate reductase flavoprotein subunit. | Putative protein. | 0.910 |
page 1 of 5