STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdeAPeriplasmic protein; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to pGpG. (670 aa)    
Predicted Functional Partners:
BB_0419
Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 0.994
BB_0361
Identified by match to protein family HMM PF01656.
  
  
 0.899
BB_0360
Conserved hypothetical protein.
     
 0.896
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
     
 0.888
BB_0221
Flagellar motor switch protein; Identified by match to protein family HMM PF01706.
   
  
 0.876
BB_0665
Conserved hypothetical protein.
      
 0.837
BB_0733
Conserved hypothetical protein.
      
 0.837
BB_0731
Conserved hypothetical protein; Identified by match to protein family HMM PF02195.
      
 0.834
PdeB
HD domain protein; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to GMP.
 
  
 0.818
BB_0796
Conserved hypothetical protein; Identified by match to protein family HMM PF03938.
      
 0.803
Your Current Organism:
Borreliella burgdorferi
NCBI taxonomy Id: 224326
Other names: B. burgdorferi B31, Borrelia burgdorferi B31, Borrelia burgdorferi str. B31, Borreliella burgdorferi B31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.