STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tarDMandelate racemase; Catalyzes the dehydration of D-tartrate to oxaloacetate. Belongs to the mandelate racemase/muconate lactonizing enzyme family. (389 aa)    
Predicted Functional Partners:
garD
Galactarate dehydrogenase; Catalyzes the formation of 5-dehydro-4-deoxy-D-glucarate from D-galactarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.818
AND88803.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.723
AND87228.1
Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.697
AmpC
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.654
AND91239.1
Enolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.598
AND94356.1
Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
AND91756.1
Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.
       0.523
AND91757.1
Amidase; Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.
       0.522
gudD
Glucarate dehydratase; Catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.516
AND94167.1
Resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.497
Your Current Organism:
Bradyrhizobium diazoefficiens
NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110
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