STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V3Z3N4_LOTGIHistone H2A; Belongs to the histone H2A family. (126 aa)    
Predicted Functional Partners:
V4A4U1_LOTGI
Uncharacterized protein.
    
 0.950
V4CI26_LOTGI
Histone H2B; Belongs to the histone H2B family.
 
 0.686
V4AH42_LOTGI
Histone H2B; Belongs to the histone H2B family.
 
 0.685
V4AFS6_LOTGI
Histone H2B; Belongs to the histone H2B family.
 
 0.684
V4AGB1_LOTGI
Histone H2B; Belongs to the histone H2B family.
 
 0.683
V3ZSB6_LOTGI
Uncharacterized protein.
    
 0.647
V3ZUQ9_LOTGI
Histone domain-containing protein; Belongs to the histone H2B family.
 
 0.637
V3ZD10_LOTGI
Histone domain-containing protein; Belongs to the histone H2B family.
 
 0.633
V4A0D9_LOTGI
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
 
 0.633
V4AAU3_LOTGI
Histone H2B; Belongs to the histone H2B family.
  
 0.624
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.