STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V3Z3W4_LOTGIUbiquitin_4 domain-containing protein. (119 aa)    
Predicted Functional Partners:
V3ZTL3_LOTGI
CHHC U11-48K-type domain-containing protein.
     
 0.884
V4B1S1_LOTGI
Uncharacterized protein.
     
 0.826
V3YYN4_LOTGI
Uncharacterized protein.
    
 0.702
V3Z9J3_LOTGI
RRM domain-containing protein.
    
 0.702
V3ZLH7_LOTGI
U1snRNP70_N domain-containing protein.
    
 0.702
V3ZJ13_LOTGI
Uncharacterized protein.
     
 0.695
V4AKT0_LOTGI
Cwf21 domain-containing protein.
     
 0.686
V4BQV0_LOTGI
Sm domain-containing protein.
   
 0.666
V4AEA0_LOTGI
Uncharacterized protein.
   
  
 0.660
V4ATJ2_LOTGI
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
     
 0.640
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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