V3Z534_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V3Z534_LOTGI

Homeobox protein. (229 aa)

Predicted Functional Partners:

V4AMK9_LOTGI

0.623

V3ZZL4_LOTGI

0.540

V4BFH9_LOTGI

0.540

V4A072_LOTGI

0.531

V4B0F1_LOTGI

0.525

V4B2B1_LOTGI

0.478

V3Z3Y7_LOTGI

0.471

V4APP3_LOTGI

0.471

V3ZMZ6_LOTGI

0.457

V4AHG9_LOTGI

0.448

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3Z3Y7_LOTGI	V3Z534_LOTGI	V3Z3Y7	V3Z534	TGF_BETA_2 domain-containing protein.	Homeobox protein.	0.471
V3Z534_LOTGI	V3Z3Y7_LOTGI	V3Z534	V3Z3Y7	Homeobox protein.	TGF_BETA_2 domain-containing protein.	0.471
V3Z534_LOTGI	V3ZMZ6_LOTGI	V3Z534	V3ZMZ6	Homeobox protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.457
V3Z534_LOTGI	V3ZZL4_LOTGI	V3Z534	V3ZZL4	Homeobox protein.	Uncharacterized protein.	0.540
V3Z534_LOTGI	V4A072_LOTGI	V3Z534	V4A072	Homeobox protein.	Aa_trans domain-containing protein.	0.531
V3Z534_LOTGI	V4AHG9_LOTGI	V3Z534	V4AHG9	Homeobox protein.	B12-binding domain-containing protein.	0.448
V3Z534_LOTGI	V4AMK9_LOTGI	V3Z534	V4AMK9	Homeobox protein.	PX domain-containing protein.	0.623
V3Z534_LOTGI	V4APP3_LOTGI	V3Z534	V4APP3	Homeobox protein.	TGFb_propeptide domain-containing protein.	0.471
V3Z534_LOTGI	V4B0F1_LOTGI	V3Z534	V4B0F1	Homeobox protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.525
V3Z534_LOTGI	V4B2B1_LOTGI	V3Z534	V4B2B1	Homeobox protein.	IPT/TIG domain-containing protein.	0.478
V3Z534_LOTGI	V4BFH9_LOTGI	V3Z534	V4BFH9	Homeobox protein.	DNA helicase; Belongs to the MCM family.	0.540
V3ZMZ6_LOTGI	V3Z534_LOTGI	V3ZMZ6	V3Z534	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Homeobox protein.	0.457
V3ZZL4_LOTGI	V3Z534_LOTGI	V3ZZL4	V3Z534	Uncharacterized protein.	Homeobox protein.	0.540
V4A072_LOTGI	V3Z534_LOTGI	V4A072	V3Z534	Aa_trans domain-containing protein.	Homeobox protein.	0.531
V4AHG9_LOTGI	V3Z534_LOTGI	V4AHG9	V3Z534	B12-binding domain-containing protein.	Homeobox protein.	0.448
V4AMK9_LOTGI	V3Z534_LOTGI	V4AMK9	V3Z534	PX domain-containing protein.	Homeobox protein.	0.623
V4APP3_LOTGI	V3Z534_LOTGI	V4APP3	V3Z534	TGFb_propeptide domain-containing protein.	Homeobox protein.	0.471
V4B0F1_LOTGI	V3Z534_LOTGI	V4B0F1	V3Z534	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	Homeobox protein.	0.525
V4B2B1_LOTGI	V3Z534_LOTGI	V4B2B1	V3Z534	IPT/TIG domain-containing protein.	Homeobox protein.	0.478
V4BFH9_LOTGI	V3Z534_LOTGI	V4BFH9	V3Z534	DNA helicase; Belongs to the MCM family.	Homeobox protein.	0.540