V3ZLU5_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V3ZLU5_LOTGI

CUE domain-containing protein. (741 aa)

Predicted Functional Partners:

V4AIF9_LOTGI

0.978

V4ABX4_LOTGI

0.948

V4BGP5_LOTGI

0.920

V3ZWW2_LOTGI

0.827

V4CHB1_LOTGI

0.827

V3Z5S1_LOTGI

0.646

V3ZP59_LOTGI

0.646

V4AFE9_LOTGI

0.646

V4AIM3_LOTGI

0.610

V3Z412_LOTGI

0.554

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3Z412_LOTGI	V3Z5S1_LOTGI	V3Z412	V3Z5S1	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.822
V3Z412_LOTGI	V3ZLU5_LOTGI	V3Z412	V3ZLU5	Uncharacterized protein.	CUE domain-containing protein.	0.554
V3Z412_LOTGI	V3ZP59_LOTGI	V3Z412	V3ZP59	Uncharacterized protein.	Uncharacterized protein.	0.822
V3Z412_LOTGI	V3ZWW2_LOTGI	V3Z412	V3ZWW2	Uncharacterized protein.	Uncharacterized protein.	0.630
V3Z412_LOTGI	V4AFE9_LOTGI	V3Z412	V4AFE9	Uncharacterized protein.	Uncharacterized protein.	0.822
V3Z412_LOTGI	V4AIF9_LOTGI	V3Z412	V4AIF9	Uncharacterized protein.	Uncharacterized protein.	0.630
V3Z412_LOTGI	V4CHB1_LOTGI	V3Z412	V4CHB1	Uncharacterized protein.	SEC63 domain-containing protein.	0.630
V3Z5S1_LOTGI	V3Z412_LOTGI	V3Z5S1	V3Z412	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.822
V3Z5S1_LOTGI	V3ZLU5_LOTGI	V3Z5S1	V3ZLU5	Helicase ATP-binding domain-containing protein.	CUE domain-containing protein.	0.646
V3Z5S1_LOTGI	V3ZP59_LOTGI	V3Z5S1	V3ZP59	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.920
V3Z5S1_LOTGI	V4ABX4_LOTGI	V3Z5S1	V4ABX4	Helicase ATP-binding domain-containing protein.	ASCH domain-containing protein.	0.518
V3Z5S1_LOTGI	V4AFE9_LOTGI	V3Z5S1	V4AFE9	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.917
V3ZLU5_LOTGI	V3Z412_LOTGI	V3ZLU5	V3Z412	CUE domain-containing protein.	Uncharacterized protein.	0.554
V3ZLU5_LOTGI	V3Z5S1_LOTGI	V3ZLU5	V3Z5S1	CUE domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.646
V3ZLU5_LOTGI	V3ZP59_LOTGI	V3ZLU5	V3ZP59	CUE domain-containing protein.	Uncharacterized protein.	0.646
V3ZLU5_LOTGI	V3ZWW2_LOTGI	V3ZLU5	V3ZWW2	CUE domain-containing protein.	Uncharacterized protein.	0.827
V3ZLU5_LOTGI	V4ABX4_LOTGI	V3ZLU5	V4ABX4	CUE domain-containing protein.	ASCH domain-containing protein.	0.948
V3ZLU5_LOTGI	V4AFE9_LOTGI	V3ZLU5	V4AFE9	CUE domain-containing protein.	Uncharacterized protein.	0.646
V3ZLU5_LOTGI	V4AIF9_LOTGI	V3ZLU5	V4AIF9	CUE domain-containing protein.	Uncharacterized protein.	0.978
V3ZLU5_LOTGI	V4AIM3_LOTGI	V3ZLU5	V4AIM3	CUE domain-containing protein.	RING-type domain-containing protein.	0.610