STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4A5G0_LOTGIPUA domain-containing protein. (182 aa)    
Predicted Functional Partners:
V3Z280_LOTGI
SUI1 domain-containing protein.
   
 
 0.991
V4AEK8_LOTGI
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.867
V3ZWQ3_LOTGI
SUI1 domain-containing protein.
   
 
 0.832
V4BHG8_LOTGI
SUI1 domain-containing protein.
   
 
 0.832
V3Z9L2_LOTGI
Uncharacterized protein.
    
   0.674
V4AU78_LOTGI
Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
 
 
  
 0.615
V3ZML0_LOTGI
Uncharacterized protein.
    
 
0.601
V4CNH2_LOTGI
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
   
 
 0.601
V3ZYL4_LOTGI
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
   0.595
V4CR66_LOTGI
S4 RNA-binding domain-containing protein.
   
 
 0.594
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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