V4A9G1_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4A9G1_LOTGI

Uncharacterized protein; Belongs to the calmodulin family. (150 aa)

Predicted Functional Partners:

V3ZNF0_LOTGI

0.689

V4BV73_LOTGI

0.689

V4A221_LOTGI

0.651

V3ZWY5_LOTGI

0.597

V4BIB8_LOTGI

0.539

V4CSB9_LOTGI

0.539

V4ACD4_LOTGI

0.516

V4BHZ2_LOTGI

0.499

V4AA46_LOTGI

0.477

V4BCS0_LOTGI

0.462

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3ZNF0_LOTGI	V4A221_LOTGI	V3ZNF0	V4A221	Uncharacterized protein; Belongs to the MAGUK family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.930
V3ZNF0_LOTGI	V4A9G1_LOTGI	V3ZNF0	V4A9G1	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein; Belongs to the calmodulin family.	0.689
V3ZNF0_LOTGI	V4BHZ2_LOTGI	V3ZNF0	V4BHZ2	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.982
V3ZNF0_LOTGI	V4BV73_LOTGI	V3ZNF0	V4BV73	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.988
V3ZWY5_LOTGI	V4A221_LOTGI	V3ZWY5	V4A221	Serine/threonine-protein phosphatase.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.432
V3ZWY5_LOTGI	V4A9G1_LOTGI	V3ZWY5	V4A9G1	Serine/threonine-protein phosphatase.	Uncharacterized protein; Belongs to the calmodulin family.	0.597
V3ZWY5_LOTGI	V4BHZ2_LOTGI	V3ZWY5	V4BHZ2	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.828
V3ZWY5_LOTGI	V4BIB8_LOTGI	V3ZWY5	V4BIB8	Serine/threonine-protein phosphatase.	Peptidylprolyl isomerase.	0.896
V3ZWY5_LOTGI	V4CSB9_LOTGI	V3ZWY5	V4CSB9	Serine/threonine-protein phosphatase.	Peptidylprolyl isomerase.	0.896
V4A221_LOTGI	V3ZNF0_LOTGI	V4A221	V3ZNF0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the MAGUK family.	0.930
V4A221_LOTGI	V3ZWY5_LOTGI	V4A221	V3ZWY5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Serine/threonine-protein phosphatase.	0.432
V4A221_LOTGI	V4A9G1_LOTGI	V4A221	V4A9G1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the calmodulin family.	0.651
V4A221_LOTGI	V4BHZ2_LOTGI	V4A221	V4BHZ2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.668
V4A9G1_LOTGI	V3ZNF0_LOTGI	V4A9G1	V3ZNF0	Uncharacterized protein; Belongs to the calmodulin family.	Uncharacterized protein; Belongs to the MAGUK family.	0.689
V4A9G1_LOTGI	V3ZWY5_LOTGI	V4A9G1	V3ZWY5	Uncharacterized protein; Belongs to the calmodulin family.	Serine/threonine-protein phosphatase.	0.597
V4A9G1_LOTGI	V4A221_LOTGI	V4A9G1	V4A221	Uncharacterized protein; Belongs to the calmodulin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.651
V4A9G1_LOTGI	V4AA46_LOTGI	V4A9G1	V4AA46	Uncharacterized protein; Belongs to the calmodulin family.	Uncharacterized protein.	0.477
V4A9G1_LOTGI	V4ACD4_LOTGI	V4A9G1	V4ACD4	Uncharacterized protein; Belongs to the calmodulin family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.516
V4A9G1_LOTGI	V4BCS0_LOTGI	V4A9G1	V4BCS0	Uncharacterized protein; Belongs to the calmodulin family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.462
V4A9G1_LOTGI	V4BHZ2_LOTGI	V4A9G1	V4BHZ2	Uncharacterized protein; Belongs to the calmodulin family.	Uncharacterized protein.	0.499