STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4AT84_LOTGINEDD8-activating enzyme E1 regulatory subunit. (537 aa)    
Predicted Functional Partners:
V4C2X0_LOTGI
E2_bind domain-containing protein.
   
 0.999
V4B2P1_LOTGI
Ubiquitin-like domain-containing protein.
   
 0.982
V4AKJ9_LOTGI
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.917
V4CD21_LOTGI
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.917
V4BDY6_LOTGI
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
 
      0.898
V4BYN6_LOTGI
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.852
V4CP36_LOTGI
Uncharacterized protein.
    
 0.850
V3ZVU6_LOTGI
RING-type domain-containing protein.
     
 0.821
V4AYZ2_LOTGI
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.800
V3ZIT0_LOTGI
ULP_PROTEASE domain-containing protein.
     
 0.784
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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