STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4AYD3_LOTGIF-box domain-containing protein. (513 aa)    
Predicted Functional Partners:
V4ARL8_LOTGI
Uncharacterized protein; Belongs to the SKP1 family.
   
 0.728
V3ZVU6_LOTGI
RING-type domain-containing protein.
    
 0.631
V4AYZ2_LOTGI
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.600
V4BYN6_LOTGI
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.600
V4ACN7_LOTGI
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 
 0.494
V4AF38_LOTGI
BRCT domain-containing protein.
      
 0.446
V4B2P1_LOTGI
Ubiquitin-like domain-containing protein.
    
 0.437
V4BC89_LOTGI
Cullin domain-containing protein; Belongs to the cullin family.
    
 0.414
V4BZB9_LOTGI
Skp1_POZ domain-containing protein; Belongs to the SKP1 family.
    
 0.409
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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