V4B542_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4B542_LOTGI

SMC_N domain-containing protein. (1022 aa)

Predicted Functional Partners:

V3Z5G5_LOTGI

0.999

V4A2Q5_LOTGI

0.999

V3ZQD3_LOTGI

0.998

V4A9M3_LOTGI

0.997

V4AH43_LOTGI

0.973

V4CM18_LOTGI

0.973

V3ZQP8_LOTGI

0.921

V3ZYT8_LOTGI

0.915

V4C2J1_LOTGI

0.913

V3ZUT2_LOTGI

0.904

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3Z5G5_LOTGI	V3ZQD3_LOTGI	V3Z5G5	V3ZQD3	SP-RING-type domain-containing protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.996
V3Z5G5_LOTGI	V3ZQP8_LOTGI	V3Z5G5	V3ZQP8	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.695
V3Z5G5_LOTGI	V3ZUT2_LOTGI	V3Z5G5	V3ZUT2	SP-RING-type domain-containing protein.	Small ubiquitin-related modifier.	0.895
V3Z5G5_LOTGI	V3ZYT8_LOTGI	V3Z5G5	V3ZYT8	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.898
V3Z5G5_LOTGI	V4A2Q5_LOTGI	V3Z5G5	V4A2Q5	SP-RING-type domain-containing protein.	Phorbol-ester/DAG-type domain-containing protein.	0.999
V3Z5G5_LOTGI	V4A9M3_LOTGI	V3Z5G5	V4A9M3	SP-RING-type domain-containing protein.	MAGE domain-containing protein.	0.995
V3Z5G5_LOTGI	V4AH43_LOTGI	V3Z5G5	V4AH43	SP-RING-type domain-containing protein.	AAA_23 domain-containing protein.	0.965
V3Z5G5_LOTGI	V4B542_LOTGI	V3Z5G5	V4B542	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.999
V3Z5G5_LOTGI	V4CM18_LOTGI	V3Z5G5	V4CM18	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.965
V3ZQD3_LOTGI	V3Z5G5_LOTGI	V3ZQD3	V3Z5G5	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	SP-RING-type domain-containing protein.	0.996
V3ZQD3_LOTGI	V3ZQP8_LOTGI	V3ZQD3	V3ZQP8	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	Uncharacterized protein.	0.765
V3ZQD3_LOTGI	V3ZUT2_LOTGI	V3ZQD3	V3ZUT2	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	Small ubiquitin-related modifier.	0.741
V3ZQD3_LOTGI	V3ZYT8_LOTGI	V3ZQD3	V3ZYT8	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	SMC_N domain-containing protein.	0.908
V3ZQD3_LOTGI	V4A2Q5_LOTGI	V3ZQD3	V4A2Q5	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	Phorbol-ester/DAG-type domain-containing protein.	0.999
V3ZQD3_LOTGI	V4A9M3_LOTGI	V3ZQD3	V4A9M3	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	MAGE domain-containing protein.	0.998
V3ZQD3_LOTGI	V4AH43_LOTGI	V3ZQD3	V4AH43	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	AAA_23 domain-containing protein.	0.966
V3ZQD3_LOTGI	V4B542_LOTGI	V3ZQD3	V4B542	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	SMC_N domain-containing protein.	0.998
V3ZQD3_LOTGI	V4CM18_LOTGI	V3ZQD3	V4CM18	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	SMC_N domain-containing protein.	0.966
V3ZQP8_LOTGI	V3Z5G5_LOTGI	V3ZQP8	V3Z5G5	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.695
V3ZQP8_LOTGI	V3ZQD3_LOTGI	V3ZQP8	V3ZQD3	Uncharacterized protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.765