STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4B652_LOTGIRNA_pol_Rpb2_1 domain-containing protein. (238 aa)    
Predicted Functional Partners:
V4BH04_LOTGI
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.995
V3Z1P0_LOTGI
RPOLD domain-containing protein.
  
 0.985
V4A100_LOTGI
RPA43_OB domain-containing protein.
   
 0.979
V4ALU5_LOTGI
Uncharacterized protein.
  
 0.975
V3ZZG2_LOTGI
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.969
V4ABV0_LOTGI
Uncharacterized protein.
   
 0.965
V4A0Z9_LOTGI
Uncharacterized protein.
   
 0.962
V4CQR2_LOTGI
Uncharacterized protein.
   
 0.959
V4B431_LOTGI
Uncharacterized protein.
   
 0.956
V3ZFS1_LOTGI
Uncharacterized protein.
   
 0.948
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
Server load: low (28%) [HD]