V4C586_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4C586_LOTGI

HMG box domain-containing protein. (123 aa)

Predicted Functional Partners:

V3ZPE0_LOTGI

0.676

V4B2Q9_LOTGI

0.545

V3Z0C1_LOTGI

0.509

V3ZY21_LOTGI

0.453

V4AEH2_LOTGI

0.434

V4A7W9_LOTGI

0.422

V3ZNZ7_LOTGI

0.402

V3ZTY8_LOTGI

0.402

V3ZYI4_LOTGI

0.402

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3Z0C1_LOTGI	V4B2Q9_LOTGI	V3Z0C1	V4B2Q9	Uncharacterized protein.	Uncharacterized protein.	0.862
V3Z0C1_LOTGI	V4C586_LOTGI	V3Z0C1	V4C586	Uncharacterized protein.	HMG box domain-containing protein.	0.509
V3ZNZ7_LOTGI	V3ZPE0_LOTGI	V3ZNZ7	V3ZPE0	Uncharacterized protein.	Runt domain-containing protein.	0.599
V3ZNZ7_LOTGI	V4C586_LOTGI	V3ZNZ7	V4C586	Uncharacterized protein.	HMG box domain-containing protein.	0.402
V3ZPE0_LOTGI	V3ZNZ7_LOTGI	V3ZPE0	V3ZNZ7	Runt domain-containing protein.	Uncharacterized protein.	0.599
V3ZPE0_LOTGI	V3ZTY8_LOTGI	V3ZPE0	V3ZTY8	Runt domain-containing protein.	Uncharacterized protein.	0.599
V3ZPE0_LOTGI	V3ZYI4_LOTGI	V3ZPE0	V3ZYI4	Runt domain-containing protein.	Uncharacterized protein.	0.599
V3ZPE0_LOTGI	V4B2Q9_LOTGI	V3ZPE0	V4B2Q9	Runt domain-containing protein.	Uncharacterized protein.	0.726
V3ZPE0_LOTGI	V4C586_LOTGI	V3ZPE0	V4C586	Runt domain-containing protein.	HMG box domain-containing protein.	0.676
V3ZTY8_LOTGI	V3ZPE0_LOTGI	V3ZTY8	V3ZPE0	Uncharacterized protein.	Runt domain-containing protein.	0.599
V3ZTY8_LOTGI	V4C586_LOTGI	V3ZTY8	V4C586	Uncharacterized protein.	HMG box domain-containing protein.	0.402
V3ZY21_LOTGI	V4C586_LOTGI	V3ZY21	V4C586	POU domain protein.	HMG box domain-containing protein.	0.453
V3ZYI4_LOTGI	V3ZPE0_LOTGI	V3ZYI4	V3ZPE0	Uncharacterized protein.	Runt domain-containing protein.	0.599
V3ZYI4_LOTGI	V4C586_LOTGI	V3ZYI4	V4C586	Uncharacterized protein.	HMG box domain-containing protein.	0.402
V4A7W9_LOTGI	V4C586_LOTGI	V4A7W9	V4C586	Uncharacterized protein; Belongs to the heparin-binding growth factors family.	HMG box domain-containing protein.	0.422
V4AEH2_LOTGI	V4B2Q9_LOTGI	V4AEH2	V4B2Q9	HMG box domain-containing protein.	Uncharacterized protein.	0.753
V4AEH2_LOTGI	V4C586_LOTGI	V4AEH2	V4C586	HMG box domain-containing protein.	HMG box domain-containing protein.	0.434
V4B2Q9_LOTGI	V3Z0C1_LOTGI	V4B2Q9	V3Z0C1	Uncharacterized protein.	Uncharacterized protein.	0.862
V4B2Q9_LOTGI	V3ZPE0_LOTGI	V4B2Q9	V3ZPE0	Uncharacterized protein.	Runt domain-containing protein.	0.726
V4B2Q9_LOTGI	V4AEH2_LOTGI	V4B2Q9	V4AEH2	Uncharacterized protein.	HMG box domain-containing protein.	0.753