pyrK_3 protein (Clostridium chromiireducens)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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Score

pyrK_3

Dihydroorotate dehydrogenase B, electron transfer subunit. (97 aa)

Predicted Functional Partners:

gltD_4

0.995

preA_2

0.986

gltD_2

0.980

gltD_5

0.979

preA_1

0.965

gltD_1

0.914

gltD_3

0.913

nifJ_2

0.907

nifJ_3

0.907

pyrD

0.903

Your Current Organism:

Clostridium chromiireducens

NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gltD_1	gltD_3	CLCHR_17720	CLCHR_20250	Glutamate synthase small chain.	Glutamate synthase small chain.	0.564
gltD_1	nifJ_2	CLCHR_17720	CLCHR_11980	Glutamate synthase small chain.	Pyruvate-flavodoxin oxidoreductase.	0.910
gltD_1	nifJ_3	CLCHR_17720	CLCHR_46340	Glutamate synthase small chain.	Pyruvate-flavodoxin oxidoreductase.	0.910
gltD_1	preA_1	CLCHR_17720	CLCHR_22220	Glutamate synthase small chain.	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.	0.908
gltD_1	preA_2	CLCHR_17720	CLCHR_36270	Glutamate synthase small chain.	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.	0.916
gltD_1	pyrD	CLCHR_17720	CLCHR_44890	Glutamate synthase small chain.	Dihydroorotate dehydrogenase B, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.	0.734
gltD_1	pyrK_3	CLCHR_17720	CLCHR_44500	Glutamate synthase small chain.	Dihydroorotate dehydrogenase B, electron transfer subunit.	0.914
gltD_2	gltD_3	CLCHR_19370	CLCHR_20250	Glutamate synthase small chain.	Glutamate synthase small chain.	0.614
gltD_2	nifJ_2	CLCHR_19370	CLCHR_11980	Glutamate synthase small chain.	Pyruvate-flavodoxin oxidoreductase.	0.910
gltD_2	nifJ_3	CLCHR_19370	CLCHR_46340	Glutamate synthase small chain.	Pyruvate-flavodoxin oxidoreductase.	0.910
gltD_2	preA_1	CLCHR_19370	CLCHR_22220	Glutamate synthase small chain.	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.	0.883
gltD_2	preA_2	CLCHR_19370	CLCHR_36270	Glutamate synthase small chain.	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.	0.979
gltD_2	pyrD	CLCHR_19370	CLCHR_44890	Glutamate synthase small chain.	Dihydroorotate dehydrogenase B, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.	0.695
gltD_2	pyrK_3	CLCHR_19370	CLCHR_44500	Glutamate synthase small chain.	Dihydroorotate dehydrogenase B, electron transfer subunit.	0.980
gltD_3	gltD_1	CLCHR_20250	CLCHR_17720	Glutamate synthase small chain.	Glutamate synthase small chain.	0.564
gltD_3	gltD_2	CLCHR_20250	CLCHR_19370	Glutamate synthase small chain.	Glutamate synthase small chain.	0.614
gltD_3	gltD_4	CLCHR_20250	CLCHR_44510	Glutamate synthase small chain.	Glutamate synthase small chain.	0.564
gltD_3	gltD_5	CLCHR_20250	CLCHR_46170	Glutamate synthase small chain.	Glutamate synthase small chain.	0.564
gltD_3	nifJ_2	CLCHR_20250	CLCHR_11980	Glutamate synthase small chain.	Pyruvate-flavodoxin oxidoreductase.	0.910
gltD_3	nifJ_3	CLCHR_20250	CLCHR_46340	Glutamate synthase small chain.	Pyruvate-flavodoxin oxidoreductase.	0.910