STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
swp_1019Type I secretion membrane fusion protein, HlyD. (469 aa)    
Predicted Functional Partners:
swp_1017
Type I secretion system ATPase, HlyB.
 
 0.974
swp_1021
Hemolysin-type calcium binding protein.
 
  
 0.936
swp_0394
ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing.
 
 0.881
swp_4580
Toxin secretion ABC transporter protein, HlyB family.
 
 
 0.869
swp_0392
Type I secretion outer membrane protein, TolC.
 
 
 0.848
swp_4866
Toxin secretion ABC transporter, ATP-binding subunit/permease protein, putative.
 
 0.781
swp_1032
Toxin secretion ATP-binding protein.
 
 
 0.770
swp_4581
ABC transporter, ATP-binding/permease protein.
 
 0.767
swp_1383
Hemolysin-type calcium-binding region.
 
  
 0.757
swp_1020
Hypothetical protein swp_1020.
       0.752
Your Current Organism:
Shewanella piezotolerans
NCBI taxonomy Id: 225849
Other names: S. piezotolerans WP3, Shewanella piezotolerans WP3, Shewanella piezotolerans str. WP3, Shewanella piezotolerans strain WP3, Shewanella sp. WP3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.