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hflD protein (Shewanella piezotolerans) - STRING interaction network
"hflD" - High frequency lysogenization protein HflD homolog in Shewanella piezotolerans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hflDHigh frequency lysogenization protein HflD homolog; IPR007451, Protein of unknown function DUF489 (205 aa)    
Predicted Functional Partners:
swp_1861
annotation not available (455 aa)
 
   
  0.980
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (371 aa)
   
        0.967
swp_3050
IPR003772, Protein of unknown function DUF177 (174 aa)
   
        0.709
swp_2294
YcgL domain-containing protein swp_2294; IPR007840, Protein of unknown function DUF709 (102 aa)
   
          0.619
rnt
Ribonuclease T; Trims short 3’ overhangs of a variety of RNA species, leaving a one or two nucleotide 3’ overhang. Responsible for the end-turnover of tRNA- specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis (235 aa)
   
        0.618
swp_0910
IPR005356, Protein of unknown function UPF0149; IPR011978, YgfB and YecA; Belongs to the UPF0149 family (220 aa)
   
        0.612
swp_1860
annotation not available (376 aa)
   
        0.593
nudJ
annotation not available (150 aa)
   
        0.590
swp_1866
annotation not available (226 aa)
   
        0.588
swp_3667
annotation not available (450 aa)
   
          0.560
Your Current Organism:
Shewanella piezotolerans
NCBI taxonomy Id: 225849
Other names: S. piezotolerans WP3, Shewanella piezotolerans, Shewanella piezotolerans WP3, Shewanella piezotolerans str. WP3, Shewanella piezotolerans strain WP3, Shewanella sp. WP3
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