Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
swp_0570 | swp_1351 | PAS domain protein. | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | 0.994 |
swp_0570 | swp_1613 | PAS domain protein. | Anti-anti-sigma factor family protein; Belongs to the anti-sigma-factor antagonist family. | 0.571 |
swp_0570 | swp_1617 | PAS domain protein. | PAS domain protein. | 0.994 |
swp_0570 | swp_1977 | PAS domain protein. | Sensor protein LuxQ. | 0.980 |
swp_0570 | swp_2167 | PAS domain protein. | Anti-sigma F factor antagonist, putative. | 0.420 |
swp_0570 | swp_2169 | PAS domain protein. | Antisigma-factor antagonist (STAS) domain protein; Belongs to the anti-sigma-factor antagonist family. | 0.511 |
swp_0570 | swp_2170 | PAS domain protein. | Two-component response regulator, putative. | 0.912 |
swp_0570 | swp_2315 | PAS domain protein. | PAS domain protein. | 0.988 |
swp_0570 | swp_4451 | PAS domain protein. | Sensory box histidine kinase/response regulator. | 0.993 |
swp_0570 | swp_4607 | PAS domain protein. | RscS. | 0.980 |
swp_1351 | swp_0570 | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | PAS domain protein. | 0.994 |
swp_1351 | swp_1613 | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | Anti-anti-sigma factor family protein; Belongs to the anti-sigma-factor antagonist family. | 0.914 |
swp_1351 | swp_1617 | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | PAS domain protein. | 0.995 |
swp_1351 | swp_1977 | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | Sensor protein LuxQ. | 0.981 |
swp_1351 | swp_2167 | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | Anti-sigma F factor antagonist, putative. | 0.890 |
swp_1351 | swp_2169 | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | Antisigma-factor antagonist (STAS) domain protein; Belongs to the anti-sigma-factor antagonist family. | 0.914 |
swp_1351 | swp_2170 | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | Two-component response regulator, putative. | 0.993 |
swp_1351 | swp_2315 | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | PAS domain protein. | 0.994 |
swp_1351 | swp_4451 | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | Sensory box histidine kinase/response regulator. | 0.994 |
swp_1351 | swp_4607 | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | RscS. | 0.981 |
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