STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
swp_2242Conserved hypothetical protein; Belongs to the UPF0319 family. (218 aa)    
Predicted Functional Partners:
swp_2394
Serine protease inhibitor, ecotin.
   
    0.831
swp_0067
Conserved hypothetical protein; IPR009962, Protein of unknown function DUF1488.
  
     0.577
swp_3126
Conserved hypothetical protein.
  
     0.521
swp_2243
Conserved hypothetical protein.
  
    0.514
swp_1751
Conserved hypothetical protein; IPR008886, Protein of unknown function UPF0227.
  
     0.481
swp_3591
SAM-dependent methyltransferase.
  
     0.460
swp_4873
Adenylate cyclase CyaB, putative.
  
     0.454
swp_3790
Regulatory protein, LysR; Belongs to the LysR transcriptional regulatory family.
  
     0.449
swp_2191
Conserved hypothetical protein.
  
     0.425
swp_4331
Conserved hypothetical protein.
  
     0.417
Your Current Organism:
Shewanella piezotolerans
NCBI taxonomy Id: 225849
Other names: S. piezotolerans WP3, Shewanella piezotolerans WP3, Shewanella piezotolerans str. WP3, Shewanella piezotolerans strain WP3, Shewanella sp. WP3
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