Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aguA | arcA | EF_0734 | EF_0104 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Arginine deiminase; Identified by match to PFAM protein family HMM PF02726. | 0.618 |
| aguA | arcC-1 | EF_0734 | EF_0106 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Carbamate kinase; Catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP. Can also catalyze, although with low efficiency, the phosphorylation of bicarbonate, leading to the formation of carboxyphosphate, an unstable intermediate found in the reactions catalyzed by carbamoyl-phosphate synthase and biotin carboxylase. Can also use acetate. | 0.821 |
| aguA | arcC-3 | EF_0734 | EF_0735 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Carbamate kinase; Identified by match to TIGR protein family HMM TIGR00761; Belongs to the carbamate kinase family. | 0.963 |
| aguA | arcC-4 | EF_0734 | EF_2575 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Carbamate kinase; Identified by match to PFAM protein family HMM PF00696; Belongs to the carbamate kinase family. | 0.821 |
| aguA | argF-1 | EF_0734 | EF_0105 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.412 |
| aguA | argF-2 | EF_0734 | EF_0732 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Ornithine carbamoyltransferase; Catalyzes the phosphorolysis of N-carbamoylputrescine to form carbamoyl phosphate and putrescine. Is involved in the degradation pathway of the polyamine agmatine. Also has weak activity with ornithine and cadaverine. | 0.979 |
| arcA | aguA | EF_0104 | EF_0734 | Arginine deiminase; Identified by match to PFAM protein family HMM PF02726. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.618 |
| arcA | arcC-1 | EF_0104 | EF_0106 | Arginine deiminase; Identified by match to PFAM protein family HMM PF02726. | Carbamate kinase; Catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP. Can also catalyze, although with low efficiency, the phosphorylation of bicarbonate, leading to the formation of carboxyphosphate, an unstable intermediate found in the reactions catalyzed by carbamoyl-phosphate synthase and biotin carboxylase. Can also use acetate. | 0.972 |
| arcA | arcC-3 | EF_0104 | EF_0735 | Arginine deiminase; Identified by match to PFAM protein family HMM PF02726. | Carbamate kinase; Identified by match to TIGR protein family HMM TIGR00761; Belongs to the carbamate kinase family. | 0.952 |
| arcA | arcC-4 | EF_0104 | EF_2575 | Arginine deiminase; Identified by match to PFAM protein family HMM PF02726. | Carbamate kinase; Identified by match to PFAM protein family HMM PF00696; Belongs to the carbamate kinase family. | 0.942 |
| arcA | argF-1 | EF_0104 | EF_0105 | Arginine deiminase; Identified by match to PFAM protein family HMM PF02726. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.999 |
| arcA | argF-2 | EF_0104 | EF_0732 | Arginine deiminase; Identified by match to PFAM protein family HMM PF02726. | Ornithine carbamoyltransferase; Catalyzes the phosphorolysis of N-carbamoylputrescine to form carbamoyl phosphate and putrescine. Is involved in the degradation pathway of the polyamine agmatine. Also has weak activity with ornithine and cadaverine. | 0.907 |
| arcC-1 | aguA | EF_0106 | EF_0734 | Carbamate kinase; Catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP. Can also catalyze, although with low efficiency, the phosphorylation of bicarbonate, leading to the formation of carboxyphosphate, an unstable intermediate found in the reactions catalyzed by carbamoyl-phosphate synthase and biotin carboxylase. Can also use acetate. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.821 |
| arcC-1 | arcA | EF_0106 | EF_0104 | Carbamate kinase; Catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP. Can also catalyze, although with low efficiency, the phosphorylation of bicarbonate, leading to the formation of carboxyphosphate, an unstable intermediate found in the reactions catalyzed by carbamoyl-phosphate synthase and biotin carboxylase. Can also use acetate. | Arginine deiminase; Identified by match to PFAM protein family HMM PF02726. | 0.972 |
| arcC-1 | arcC-3 | EF_0106 | EF_0735 | Carbamate kinase; Catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP. Can also catalyze, although with low efficiency, the phosphorylation of bicarbonate, leading to the formation of carboxyphosphate, an unstable intermediate found in the reactions catalyzed by carbamoyl-phosphate synthase and biotin carboxylase. Can also use acetate. | Carbamate kinase; Identified by match to TIGR protein family HMM TIGR00761; Belongs to the carbamate kinase family. | 0.810 |
| arcC-1 | arcC-4 | EF_0106 | EF_2575 | Carbamate kinase; Catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP. Can also catalyze, although with low efficiency, the phosphorylation of bicarbonate, leading to the formation of carboxyphosphate, an unstable intermediate found in the reactions catalyzed by carbamoyl-phosphate synthase and biotin carboxylase. Can also use acetate. | Carbamate kinase; Identified by match to PFAM protein family HMM PF00696; Belongs to the carbamate kinase family. | 0.810 |
| arcC-1 | argF-1 | EF_0106 | EF_0105 | Carbamate kinase; Catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP. Can also catalyze, although with low efficiency, the phosphorylation of bicarbonate, leading to the formation of carboxyphosphate, an unstable intermediate found in the reactions catalyzed by carbamoyl-phosphate synthase and biotin carboxylase. Can also use acetate. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.996 |
| arcC-1 | argF-2 | EF_0106 | EF_0732 | Carbamate kinase; Catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP. Can also catalyze, although with low efficiency, the phosphorylation of bicarbonate, leading to the formation of carboxyphosphate, an unstable intermediate found in the reactions catalyzed by carbamoyl-phosphate synthase and biotin carboxylase. Can also use acetate. | Ornithine carbamoyltransferase; Catalyzes the phosphorolysis of N-carbamoylputrescine to form carbamoyl phosphate and putrescine. Is involved in the degradation pathway of the polyamine agmatine. Also has weak activity with ornithine and cadaverine. | 0.948 |
| arcC-1 | gdhA | EF_0106 | EF_1415 | Carbamate kinase; Catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP. Can also catalyze, although with low efficiency, the phosphorylation of bicarbonate, leading to the formation of carboxyphosphate, an unstable intermediate found in the reactions catalyzed by carbamoyl-phosphate synthase and biotin carboxylase. Can also use acetate. | Glutamate dehydrogenase; Similar to GP:10174720; identified by sequence similarity; putative; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.905 |
| arcC-1 | glnA | EF_0106 | EF_2159 | Carbamate kinase; Catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP. Can also catalyze, although with low efficiency, the phosphorylation of bicarbonate, leading to the formation of carboxyphosphate, an unstable intermediate found in the reactions catalyzed by carbamoyl-phosphate synthase and biotin carboxylase. Can also use acetate. | Glutamine synthetase, type I; Identified by match to PFAM protein family HMM PF03951. | 0.908 |
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