STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BT_2772Putative protein phosphatase. (549 aa)    
Predicted Functional Partners:
BT_2771
Putative serine/threonine-protein kinase pknB.
 
 0.973
BT_2769
Putative serine/threonine-protein kinase pknB.
 
 
 0.971
BT_0312
2-oxoisovalerate dehydrogenase beta subunit.
  
 0.958
BT_2774
Putative adenylate cyclase.
 
 
 0.873
BT_2773
Forkhead-associated protein-like protein.
 
 
 0.840
BT_2770
Conserved hypothetical protein, serine/threonine kinase pknB-like protein.
  
 
 0.821
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.796
gcvT
Putative aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.759
BT_3711
Conserved hypothetical protein; Eukaryotic-type serine/threonine kinase-like.
  
 
 0.722
BT_2042
tRNA and rRNA cytosine-C5-methylase.
 
 
 0.706
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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