Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BC_1203 | bla | BC_1203 | BC_2473 | Cell division protein ftsW; Belongs to the SEDS family. | Beta-lactamase. | 0.773 |
BC_1203 | cysK | BC_1203 | BC_0075 | Cell division protein ftsW; Belongs to the SEDS family. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.527 |
BC_1203 | mfd | BC_1203 | BC_0058 | Cell division protein ftsW; Belongs to the SEDS family. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.603 |
BC_1203 | pth | BC_1203 | BC_0056 | Cell division protein ftsW; Belongs to the SEDS family. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.559 |
BC_1203 | tilS | BC_1203 | BC_0070 | Cell division protein ftsW; Belongs to the SEDS family. | Cell cycle protein MesJ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.742 |
BC_3948 | bla | BC_3948 | BC_2473 | Cell division protein ftsW; Belongs to the SEDS family. | Beta-lactamase. | 0.773 |
BC_3948 | cysK | BC_3948 | BC_0075 | Cell division protein ftsW; Belongs to the SEDS family. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.527 |
BC_3948 | mfd | BC_3948 | BC_0058 | Cell division protein ftsW; Belongs to the SEDS family. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.607 |
BC_3948 | pth | BC_3948 | BC_0056 | Cell division protein ftsW; Belongs to the SEDS family. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.561 |
BC_3948 | tilS | BC_3948 | BC_0070 | Cell division protein ftsW; Belongs to the SEDS family. | Cell cycle protein MesJ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.742 |
bla | BC_1203 | BC_2473 | BC_1203 | Beta-lactamase. | Cell division protein ftsW; Belongs to the SEDS family. | 0.773 |
bla | BC_3948 | BC_2473 | BC_3948 | Beta-lactamase. | Cell division protein ftsW; Belongs to the SEDS family. | 0.773 |
bla | cysK | BC_2473 | BC_0075 | Beta-lactamase. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.521 |
bla | mfd | BC_2473 | BC_0058 | Beta-lactamase. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.527 |
bla | pth | BC_2473 | BC_0056 | Beta-lactamase. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.546 |
bla | tilS | BC_2473 | BC_0070 | Beta-lactamase. | Cell cycle protein MesJ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.713 |
cysK | BC_1203 | BC_0075 | BC_1203 | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Cell division protein ftsW; Belongs to the SEDS family. | 0.527 |
cysK | BC_3948 | BC_0075 | BC_3948 | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Cell division protein ftsW; Belongs to the SEDS family. | 0.527 |
cysK | bla | BC_0075 | BC_2473 | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Beta-lactamase. | 0.521 |
cysK | ftsH | BC_0075 | BC_0072 | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Cell division protein ftsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.494 |
page 1 of 3