Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BC_1468 | BC_2114 | BC_1468 | BC_2114 | Superoxide dismutase. | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | 0.765 |
BC_1468 | BC_3008 | BC_1468 | BC_3008 | Superoxide dismutase. | Catalase. | 0.797 |
BC_1468 | BC_4907 | BC_1468 | BC_4907 | Superoxide dismutase. | Superoxide dismutase (Cu-Zn). | 0.829 |
BC_1468 | cdr | BC_1468 | BC_0791 | Superoxide dismutase. | NADH dehydrogenase. | 0.828 |
BC_1468 | dnaJ | BC_1468 | BC_4311 | Superoxide dismutase. | Chaperone protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.788 |
BC_1468 | rplC | BC_1468 | BC_0131 | Superoxide dismutase. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.749 |
BC_1468 | rplM | BC_1468 | BC_0164 | Superoxide dismutase. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.759 |
BC_1468 | sucD | BC_1468 | BC_3833 | Superoxide dismutase. | Succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.805 |
BC_1468 | tpx | BC_1468 | BC_4639 | Superoxide dismutase. | Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. | 0.777 |
BC_1468 | ybeY | BC_1468 | BC_4300 | Superoxide dismutase. | Hypothetical Metal-Binding Protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.747 |
BC_2114 | BC_1468 | BC_2114 | BC_1468 | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Superoxide dismutase. | 0.765 |
BC_2114 | BC_3008 | BC_2114 | BC_3008 | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Catalase. | 0.655 |
BC_2114 | BC_4907 | BC_2114 | BC_4907 | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Superoxide dismutase (Cu-Zn). | 0.810 |
BC_2114 | cdr | BC_2114 | BC_0791 | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | NADH dehydrogenase. | 0.402 |
BC_2114 | tpx | BC_2114 | BC_4639 | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. | 0.742 |
BC_3008 | BC_1468 | BC_3008 | BC_1468 | Catalase. | Superoxide dismutase. | 0.797 |
BC_3008 | BC_2114 | BC_3008 | BC_2114 | Catalase. | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | 0.655 |
BC_3008 | BC_4907 | BC_3008 | BC_4907 | Catalase. | Superoxide dismutase (Cu-Zn). | 0.859 |
BC_3008 | sucD | BC_3008 | BC_3833 | Catalase. | Succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.402 |
BC_4907 | BC_1468 | BC_4907 | BC_1468 | Superoxide dismutase (Cu-Zn). | Superoxide dismutase. | 0.829 |
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