STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE40262.1Predicted transcriptional regulator. (122 aa)    
Predicted Functional Partners:
SDE40233.1
TonB protein C-terminal.
 
 
 0.994
SDE39579.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
 
 0.957
SDE89508.1
BlaR1 peptidase M56.
 
 
 0.923
SDE39559.1
Predicted transcriptional regulator.
  
  
 
0.880
SDE89528.1
Predicted transcriptional regulator.
  
  
 
0.878
SDE37286.1
Cu2+-exporting ATPase.
  
  
 0.690
SDE40283.1
Hypothetical protein.
       0.586
SDE55331.1
Protein TonB.
 
 
 0.546
SDE40216.1
Hypothetical protein.
       0.535
SDE37237.1
Copper chaperone CopZ.
  
  
 0.507
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.