STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE44323.1Cysteine desulfuration protein SufE. (141 aa)    
Predicted Functional Partners:
SDE44289.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.996
SDE44344.1
FeS assembly SUF system protein.
     0.957
SDE44263.1
Fe-S cluster assembly protein SufD.
 
 
 0.875
SDE44235.1
Fe-S cluster assembly ATP-binding protein.
 
   0.859
SDE44200.1
Iron-regulated ABC transporter membrane component SufB.
 
 
 0.836
SDE85270.1
Selenocysteine lyase/Cysteine desulfurase.
  
 0.829
SDF01232.1
Selenocysteine lyase/Cysteine desulfurase.
  
 0.829
SDE44311.1
Heat shock protein HslJ.
       0.780
SDE44365.1
Protein of unknown function.
       0.693
SDE44223.1
Hypothetical protein.
       0.473
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.