Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBU_0586 | carB | CBU_0586 | CBU_1281 | Pyridine nucleotide-disulfide oxidoreductase family. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.970 |
CBU_0586 | pyrB | CBU_0586 | CBU_2095 | Pyridine nucleotide-disulfide oxidoreductase family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.927 |
CBU_0586 | pyrD | CBU_0586 | CBU_0971 | Pyridine nucleotide-disulfide oxidoreductase family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.999 |
CBU_0586 | pyrE | CBU_0586 | CBU_0296 | Pyridine nucleotide-disulfide oxidoreductase family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.846 |
CBU_0586 | pyrF | CBU_0586 | CBU_0531 | Pyridine nucleotide-disulfide oxidoreductase family. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.946 |
CBU_1233 | pyrF | CBU_1233 | CBU_0531 | 5'-nucleotidase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.900 |
CBU_1233 | pyrH | CBU_1233 | CBU_1384 | 5'-nucleotidase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.900 |
CBU_1233 | surE | CBU_1233 | CBU_1671 | 5'-nucleotidase. | Acid phosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.900 |
CBU_1233 | udk | CBU_1233 | CBU_0872 | 5'-nucleotidase. | Uridine kinase. | 0.900 |
carB | CBU_0586 | CBU_1281 | CBU_0586 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Pyridine nucleotide-disulfide oxidoreductase family. | 0.970 |
carB | pyrB | CBU_1281 | CBU_2095 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
carB | pyrD | CBU_1281 | CBU_0971 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.966 |
carB | pyrE | CBU_1281 | CBU_0296 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.962 |
carB | pyrF | CBU_1281 | CBU_0531 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.959 |
carB | pyrH | CBU_1281 | CBU_1384 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.491 |
carB | udk | CBU_1281 | CBU_0872 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Uridine kinase. | 0.414 |
lapB | pyrF | CBU_0530 | CBU_0531 | Tetratricopeptide repeat family protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.931 |
pyrB | CBU_0586 | CBU_2095 | CBU_0586 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Pyridine nucleotide-disulfide oxidoreductase family. | 0.927 |
pyrB | carB | CBU_2095 | CBU_1281 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.999 |
pyrB | pyrD | CBU_2095 | CBU_0971 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.966 |
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