Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBU_0656 | CBU_0658 | CBU_0656 | CBU_0658 | Hypothetical transcriptional regulatory protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein. | 0.741 |
CBU_0656 | CBU_0660 | CBU_0656 | CBU_0660 | Hypothetical transcriptional regulatory protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein. | 0.496 |
CBU_0656 | acpP | CBU_0656 | CBU_0496 | Hypothetical transcriptional regulatory protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.461 |
CBU_0656 | dnaZX | CBU_0656 | CBU_0659 | Hypothetical transcriptional regulatory protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.718 |
CBU_0656 | recR | CBU_0656 | CBU_0657 | Hypothetical transcriptional regulatory protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.948 |
CBU_0658 | CBU_0656 | CBU_0658 | CBU_0656 | Hypothetical protein. | Hypothetical transcriptional regulatory protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.741 |
CBU_0658 | CBU_0660 | CBU_0658 | CBU_0660 | Hypothetical protein. | Hypothetical protein. | 0.516 |
CBU_0658 | dnaZX | CBU_0658 | CBU_0659 | Hypothetical protein. | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.707 |
CBU_0658 | recR | CBU_0658 | CBU_0657 | Hypothetical protein. | Recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.929 |
CBU_0660 | CBU_0656 | CBU_0660 | CBU_0656 | Hypothetical protein. | Hypothetical transcriptional regulatory protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.496 |
CBU_0660 | CBU_0658 | CBU_0660 | CBU_0658 | Hypothetical protein. | Hypothetical protein. | 0.516 |
CBU_0660 | dnaZX | CBU_0660 | CBU_0659 | Hypothetical protein. | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.773 |
CBU_0660 | recR | CBU_0660 | CBU_0657 | Hypothetical protein. | Recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.509 |
acpP | CBU_0656 | CBU_0496 | CBU_0656 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Hypothetical transcriptional regulatory protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.461 |
dnaZX | CBU_0656 | CBU_0659 | CBU_0656 | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Hypothetical transcriptional regulatory protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.718 |
dnaZX | CBU_0658 | CBU_0659 | CBU_0658 | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Hypothetical protein. | 0.707 |
dnaZX | CBU_0660 | CBU_0659 | CBU_0660 | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Hypothetical protein. | 0.773 |
dnaZX | recR | CBU_0659 | CBU_0657 | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.911 |
recR | CBU_0656 | CBU_0657 | CBU_0656 | Recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | Hypothetical transcriptional regulatory protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.948 |
recR | CBU_0658 | CBU_0657 | CBU_0658 | Recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | Hypothetical protein. | 0.929 |
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