STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBU_1023Quinone oxidoreductase. (318 aa)    
Predicted Functional Partners:
CBU_0788
Polyketide synthase.
 
 
 0.943
CBU_1023a
Hypothetical protein.
       0.773
fabD
malonyl-CoA-[acyl-carrier-protein] transacylase.
 
    
 0.599
CBU_0177
Glycine betaine-binding protein.
 
    0.577
yfcX
delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.553
CBU_1928
acyl-CoA synthetase.
 
  
 0.504
CBU_0166
Hypothetical protein.
  
  
 0.489
tdh
Threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
 
  
 0.414
Your Current Organism:
Coxiella burnetii
NCBI taxonomy Id: 227377
Other names: C. burnetii RSA 493, Coxiella burnetii RSA 493, Coxiella burnetii str. RSA 493
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