Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBU_0455 | CBU_1477 | CBU_0455 | CBU_1477 | Thioredoxin; Belongs to the thioredoxin family. | Peroxiredoxin. | 0.434 |
CBU_0455 | bcp | CBU_0455 | CBU_0963 | Thioredoxin; Belongs to the thioredoxin family. | Thioredoxin peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events. | 0.692 |
CBU_0455 | trxB | CBU_0455 | CBU_1193 | Thioredoxin; Belongs to the thioredoxin family. | Thioredoxin reductase. | 0.846 |
CBU_0876 | csdB | CBU_0876 | CBU_1357 | Molybdopterin biosynthesis MoeB protein. | Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.543 |
CBU_0876 | trxB | CBU_0876 | CBU_1193 | Molybdopterin biosynthesis MoeB protein. | Thioredoxin reductase. | 0.738 |
CBU_1194 | lolA | CBU_1194 | CBU_1190 | Hypothetical membrane spanning protein. | Outer-membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity). | 0.484 |
CBU_1194 | trxB | CBU_1194 | CBU_1193 | Hypothetical membrane spanning protein. | Thioredoxin reductase. | 0.689 |
CBU_1477 | CBU_0455 | CBU_1477 | CBU_0455 | Peroxiredoxin. | Thioredoxin; Belongs to the thioredoxin family. | 0.434 |
CBU_1477 | trx | CBU_1477 | CBU_2087 | Peroxiredoxin. | Thioredoxin; Belongs to the thioredoxin family. | 0.466 |
CBU_1477 | trxB | CBU_1477 | CBU_1193 | Peroxiredoxin. | Thioredoxin reductase. | 0.790 |
CBU_1706 | trxB | CBU_1706 | CBU_1193 | Thioredoxin peroxidase. | Thioredoxin reductase. | 0.790 |
bcp | CBU_0455 | CBU_0963 | CBU_0455 | Thioredoxin peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events. | Thioredoxin; Belongs to the thioredoxin family. | 0.692 |
bcp | trx | CBU_0963 | CBU_2087 | Thioredoxin peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events. | Thioredoxin; Belongs to the thioredoxin family. | 0.714 |
bcp | trxB | CBU_0963 | CBU_1193 | Thioredoxin peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events. | Thioredoxin reductase. | 0.748 |
csdB | CBU_0876 | CBU_1357 | CBU_0876 | Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | Molybdopterin biosynthesis MoeB protein. | 0.543 |
csdB | trxB | CBU_1357 | CBU_1193 | Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | Thioredoxin reductase. | 0.902 |
dsbD | trx | CBU_1723 | CBU_2087 | Thiol:disulfide interchange protein; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | Thioredoxin; Belongs to the thioredoxin family. | 0.445 |
dsbD | trxB | CBU_1723 | CBU_1193 | Thiol:disulfide interchange protein; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | Thioredoxin reductase. | 0.685 |
lolA | CBU_1194 | CBU_1190 | CBU_1194 | Outer-membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity). | Hypothetical membrane spanning protein. | 0.484 |
lolA | trxB | CBU_1190 | CBU_1193 | Outer-membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity). | Thioredoxin reductase. | 0.649 |
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