node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
def2 | rplI | CBU_1879 | CBU_0867 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | 0.780 |
def2 | rplK | CBU_1879 | CBU_0226 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.778 |
def2 | rplU | CBU_1879 | CBU_0385 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.811 |
def2 | rplV | CBU_1879 | CBU_0243 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.800 |
def2 | rplX | CBU_1879 | CBU_0249 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.775 |
def2 | rpmA | CBU_1879 | CBU_0386 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.791 |
def2 | rpsP | CBU_1879 | CBU_0445 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.785 |
def2 | rpsT | CBU_1879 | CBU_0389 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.780 |
def2 | rpsU | CBU_1879 | CBU_1593 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.805 |
def2 | tig | CBU_1879 | CBU_0737 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Trigger factor, ppiase; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase. | 0.784 |
rplI | def2 | CBU_0867 | CBU_1879 | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.780 |
rplI | rplK | CBU_0867 | CBU_0226 | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.986 |
rplI | rplU | CBU_0867 | CBU_0385 | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.991 |
rplI | rplV | CBU_0867 | CBU_0243 | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.986 |
rplI | rplX | CBU_0867 | CBU_0249 | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.987 |
rplI | rpmA | CBU_0867 | CBU_0386 | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.988 |
rplI | rpsP | CBU_0867 | CBU_0445 | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.987 |
rplI | rpsT | CBU_0867 | CBU_0389 | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.977 |
rplI | rpsU | CBU_0867 | CBU_1593 | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.964 |
rplI | tig | CBU_0867 | CBU_0737 | LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family. | Trigger factor, ppiase; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase. | 0.899 |