STRINGSTRING
pkn13 protein (Streptomyces avermitilis) - STRING interaction network
"pkn13" - Serine/threonine protein kinase in Streptomyces avermitilis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pkn13Serine/threonine protein kinase (499 aa)    
Predicted Functional Partners:
prpH
Magnesium or manganese-dependent protein phosphatase (381 aa)
 
  0.969
prpB8
Magnesium or manganese-dependent protein phosphatase (514 aa)
  0.957
prpA1
Serine/threonine protein phosphatase (848 aa)
   
  0.777
prpA2
Serine/threonine protein phosphatase (369 aa)
   
  0.757
SAV_6932
Ankyrin-like protein (134 aa)
   
  0.695
SAV_6206
Hypothetical protein (308 aa)
   
  0.695
rpoZ
RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (90 aa)
     
  0.670
SAV_6981
Hypothetical protein (324 aa)
 
 
  0.667
htpG
HSP90 family protein (612 aa)
       
  0.661
cysM1
Cystathionine beta-synthase (464 aa)
   
  0.661
Your Current Organism:
Streptomyces avermitilis
NCBI taxonomy Id: 227882
Other names: S. avermitilis, S. avermitilis MA-4680, Streptomyces avermectinius, Streptomyces avermectinius Takahashi et al. 2002, Streptomyces avermitilis, Streptomyces avermitilis MA-4680, Streptomyces avermitilis str. MA-4680
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