STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uppSUndecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (250 aa)    
Predicted Functional Partners:
ispA
Geranyltranstransferase; Similar to SP:O66126, and GB:X72832; identified by sequence similarity; putative; Belongs to the FPP/GGPP synthase family.
 
 
 0.947
argS
arginyl-tRNA synthetase; Identified by match to PFAM protein family HMM PF02756.
  
    0.855
CCA_00173
1-acyl-sn-glycerol-3-phosphate acyltransferase, putative; Similar to SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, and PID:2313154; identified by sequence similarity; putative.
   
   0.837
cmk
Cytidylate kinase; Identified by match to TIGR protein family HMM TIGR01313.
       0.824
CCA_00175
Phosphatidate cytidylyltransferase; Similar to SP:Q9Z7Y6; identified by sequence similarity; putative.
       0.824
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
 
  
 0.822
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
  
  
 0.820
CCA_00442
Zinc protease; Similar to GB:X78435, SP:P48226, and PID:468559; identified by sequence similarity; putative.
 
    0.766
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
  
    0.756
nusA
N utilization substance protein A; Participates in both transcription termination and antitermination.
  
    0.730
Your Current Organism:
Chlamydia caviae
NCBI taxonomy Id: 227941
Other names: C. caviae GPIC, Chlamydia caviae GPIC, Chlamydophila caviae GPIC, Chlamydophila caviae str. GPIC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.